{"id":2115,"date":"2024-05-06T09:57:48","date_gmt":"2024-05-06T09:57:48","guid":{"rendered":"https:\/\/www.bio.iitb.ac.in\/~dkagrawal\/?page_id=2115"},"modified":"2026-04-04T15:37:41","modified_gmt":"2026-04-04T11:37:41","slug":"journals","status":"publish","type":"page","link":"https:\/\/www.bio.iitb.ac.in\/~dkagrawal\/journals\/","title":{"rendered":"Journals"},"content":{"rendered":"\t\t
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Journal Publications\u200b<\/h1>\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t
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2026<\/h5>

SD Deb, S Dey, DK Agrawal, <\/b>“Synthesis of ventilator dyssynchrony waveforms using a hybrid generative model and a lung model”,\u00a0Biomedical Signal Processing and Control 117, 109452, 2026<\/p>\t\t\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t

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2025<\/h5>

AS Ben Geoffrey, D Agrawal<\/b>, NM Kulkarni, M Gunasekaran, “Molecular Glue-Design-Evaluator (MOLDE): an advanced method for in-silico molecular glue design”,\u00a0ACS omega 10 (7), 6650-6662, 2025<\/p>\t\t\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t

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2024<\/b><\/h5>

D. K. Agrawal<\/span>, B. J. Smith, P. D. Sottile, G. Hripcsak and D. J. Albers, \u201cQuantifiable identification of flow-limited ventilator dyssynchrony with the deformed lung ventilator model\u201d, Computers in Biology and Medicine, 173, 2023.<\/p>\t\t\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t

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2023<\/b><\/h5>

K. J. Souza, and D. K. Agrawal,<\/b> \u201cEmploying Toehold-Mediated DNA Strand Displacement Reactions for Biomedical Applications\u201d, under review, 2023.<\/p>\t\t\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t

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2021<\/span><\/h5>

D. K. Agrawal,<\/b> B. J. Smith, P. D. Sottile and D. J. Albers, \u201cA damaged-informed lung model for ventilator waveforms\u201d, Frontiers in Physiology, section Respiratory Physiology, no. 14, 2021 (Impact Factor (IF): 4.8).<\/span><\/p>\t\t\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t

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2020<\/h5>

S. W. Schaffter, J. Schneider, <\/span>D. K. Agrawal<\/b>, E. Rothchild, T. M. Murphy and R. Schulman \u201cReconfigurable DNA nanotube architectures via selective regulation of terminating structures\u201d, ACS Nano, vol. 14, no. 10, pp. 13451\u201313462, 2020 (IF: 18).<\/span><\/p>

D. K. Agrawal<\/b>, and R. Schulman, \u201cModular protein-oligonucleotide signal exchange\u201d, Nucleic Acids Research, vol. 48, no. 12, pp. 6431-6444, 2020 (IF: 19.6).<\/span><\/p>

D. K. Agrawal, <\/b>E.M. Dolan, N. E. Hernandez, K. M. Blacklock, S. D. Khare, and E. D Sontag, \u201cMathematical models of protease-based enzymatic biosensors\u201d, ACS Synthetic Biology, vol. 9, no. 2, pp. 198-208, 2020 (IF: 5.1).<\/p>\t\t\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t

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2019<\/h5>

D. K. Agrawal<\/b>, R. Marshall, V. Noireaux, and E. D Sontag, \u201cIn vitro Implementation of Robust Gene Regulation in a Synthetic Biomolecular Integral Controller\u201d Nature Communications, no.10, pp. 5760, 2019 (IF: 14.9).<\/p>

Westbrook, X. Tang, R. Marshall, C. Maxwell, J. Chappell, D. K. Agrawal<\/b>, M. J. Dunlop, V. Noireaux, C. Beisel, J. Lucks, E. Franco, \u201cDistinct Timescales of RNA Regulators Enable the Construction of a Genetic Pulse Generator\u201d, Biotechnology and Bioengineering, vol. 116, no. 5, pp. 1139-1151, 2019 (IF: 4.3).<\/p>\t\t\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t

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2018<\/h5>

D. K. Agrawal<\/b>, X. Tang, A. Westbrook, R. Marshall, C. S. Maxwell, J. Lucks, V. Noireaux, Chase L. Beisel, Mary J. Dunlop, and E. Franco, \u201cMathematical Modeling of RNA-Based Architectures for Closed Loop Control of Gene Expression\u201d, ACS Synthetic Biology, vol. 7, no. 5, pp. 1219-1228, 2018 (IF: 5.1).<\/p>\t\t\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t

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2017<\/h5>

D. K. Agrawal<\/b>, R. Jiang, S. Reinhart, A. M. Mohammed, T. D. Jorgenson, and R. Schulman,\u201cTerminating DNA Tile Assembly with Nanostructured Caps\u201d, ACS Nano, vol. 11, no. 10, pp. 9770-9779, 2017 (IF: 18).
T. D. Jorgenson, A. M. Mohammed, D. K. Agrawal<\/b>, and R. Schulman,\u201cSelf-Assembly of Hierarchical DNA Nanotube Architectures with well-defined Geometries\u201d, ACS Nano, vol. 11, no. 2, pp. 1927-1936, 2017 (IF: 18).<\/p>\t\t\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t

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2016<\/h5>

D. K. Agrawal<\/b>, F. Bizzarri, A. Brambilla, and A. Seshia,\u201cNumerical Verification of an Analytical Model for Phase Noise in MEMS Oscillators\u201d, IEEE Transactions on Ultrasonics, Ferroelectrics, and Frequency Control, vol. 63, no. 8, pp. 1204-1207, 2016 (IF: 3).
2015
D. K. Agrawal<\/b>, E. Franco, and R. Schulman,\u201cA Self-regulating Biomolecular Comparator for Processing Oscillatory Signals\u201d, Journal of the Royal Society Interface, vol. 12, no. 111, pp. 20150586, 2015 (IF: 3.2).
2014
D. K. Agrawal<\/b> and A. A. Seshia,\u201cAn Analytical Formulation for Phase Noise in MEMS Oscillators\u201d, IEEE Transactions on Ultrasonics, Ferroelectrics, and Frequency Control, vol. 61, no. 12, pp. 1938-1952, 2014 (IF: 3).
D. K. Agrawal<\/b>, J. Woodhouse, and A. A. Seshia,\u201cSynchronization in a Coupled Architecture of Microelectromechanical Oscillators\u201d, Journal of Applied Physics, vol. 115, no. 16, pp. 164904, 2014 (IF: 2.3).<\/p>\t\t\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t

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2013<\/h5>

D. K. Agrawal<\/b>, J. Woodhouse, and A. A. Seshia,\u201cObservation of Locked Phase Dynamics and Enhanced Frequency Stability in Synchronized Micromechanical Oscillators\u201d, Physical Review Letters, vol. 111, no. 8, pp. 084101, 2013 (IF: 9.2).
D. K. Agrawal<\/b>, J. Woodhouse, and A. A. Seshia,\u201cModeling Nonlinearities in MEMS Oscillators\u201d, IEEE Transactions on Ultrasonics, Ferroelectrics, and Frequency Control, vol. 60, no. 8, pp. 1646-1659, 2013 (IF: 3).<\/p>\t\t\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t

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2011<\/h5>

D. K. Agrawal<\/b> and S. Bhattacharya,\u201cIntegrated Optical and MEMS Based Design Process for a Variable Optical Attenuator\u201d, Optics and Lasers in Engineering, vol. 49, no. 7, pp. 848-854, 2011.<\/p>\t\t\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t","protected":false},"excerpt":{"rendered":"

Journal Publications\u200b 2026 SD Deb, S Dey, DK Agrawal, “Synthesis of ventilator dyssynchrony waveforms using a hybrid generative model and a lung model”,\u00a0Biomedical Signal Processing and Control 117, 109452, 2026 2025 AS Ben Geoffrey, D Agrawal, NM Kulkarni, M Gunasekaran, “Molecular Glue-Design-Evaluator (MOLDE): an advanced method for in-silico molecular glue design”,\u00a0ACS omega 10 (7), 6650-6662, […]<\/p>\n","protected":false},"author":1,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-2115","page","type-page","status-publish","hentry"],"blocksy_meta":{"styles_descriptor":{"styles":{"desktop":"","tablet":"","mobile":""},"google_fonts":[],"version":6}},"_links":{"self":[{"href":"https:\/\/www.bio.iitb.ac.in\/~dkagrawal\/wp-json\/wp\/v2\/pages\/2115","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.bio.iitb.ac.in\/~dkagrawal\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/www.bio.iitb.ac.in\/~dkagrawal\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/www.bio.iitb.ac.in\/~dkagrawal\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/www.bio.iitb.ac.in\/~dkagrawal\/wp-json\/wp\/v2\/comments?post=2115"}],"version-history":[{"count":31,"href":"https:\/\/www.bio.iitb.ac.in\/~dkagrawal\/wp-json\/wp\/v2\/pages\/2115\/revisions"}],"predecessor-version":[{"id":4730,"href":"https:\/\/www.bio.iitb.ac.in\/~dkagrawal\/wp-json\/wp\/v2\/pages\/2115\/revisions\/4730"}],"wp:attachment":[{"href":"https:\/\/www.bio.iitb.ac.in\/~dkagrawal\/wp-json\/wp\/v2\/media?parent=2115"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}