Synthesis of ventilator dyssynchrony waveforms using a hybrid generative model and a lung model. Biomedical Signal Processing and Control 117, 109452 (2026).
Publisher page →
Research Outputs
Publications
Selected peer-reviewed work in computational medicine, physiological modelling and engineered biological systems.
Selected recent publications
Quantifiable identification of flow-limited ventilator dyssynchrony with the deformed lung ventilator model. Computers in Biology and Medicine 173, 108349 (2024).
Publisher page →A damaged-informed lung ventilator model for ventilator waveforms. Frontiers in Physiology 12, 724046 (2021).
Publisher page →Modular protein–oligonucleotide signal exchange. Nucleic Acids Research 48, 6431–6444 (2020).
Publisher page →Mathematical models of protease-based enzymatic biosensors. ACS Synthetic Biology 9, 198–208 (2020).
Publisher page →In vitro implementation of robust gene regulation in a synthetic biomolecular integral controller. Nature Communications 10, 5760 (2019).
Publisher page →Conferences
Conference presentations, invited talks and research symposium contributions in mathematical modelling, computational medicine and biological engineering.
2023
“Developing a mathematical model for early detection of viral hepatitis induced liver dysfunction,” 2023 American Physiology Summit, Long Beach, USA, April 20–23, 2023.
2021
“Some Remarks on damaged-informed lung model for ventilator waveforms,” 2021 Data Science Symposium, August 27, 2021 (oral presentation).
“Toward phenotyping of ventilator-induced lung injury with the damage-informed pulmonary model of lung-ventilator interaction: accepted” in AMIA 2021 Annual Symposium: Hilton San Diego Bayfront, Oct 30–Nov 3, 2021 (oral presentation).
“Developing damaged-informed lung model for ventilator waveforms,” 2021 Happening Virtually: SIAM Conference On Dynamical Systems, May 23–27, 2021 (oral presentation).
2020
“Mathematical modeling of ventilation patterns for patients with acute respiratory distress syndrome,” 2020 SIAM Conference on the Life Sciences, Garden Grove, California, USA, Jun 8–11, 2020 (oral presentation).
2019
“Some Remarks on Robust Gene Regulation in a Biomolecular Integral Controller” 58th IEEE Conference on Decision and Control, Nice, France, Dec. 11–13, 2019 (Invited talk).
“Constructing Mathematical Models of Protease Based Enzymatic Logic Gates,” 13th Annual q-bio Conference, San Francisco, CA, USA, Jul. 31–Aug. 3, 2019.
2018
“Designing Protease Based Logic Gates,” The 1st Annual NEU Bioengineering Research Symposium, Boston, MA, USA, Jun. 20, 2018.
2017
“RNA-based PID Controllers for Regulation of Gene Expression,” 23rd International Conference on DNA Computing and Molecular Programming (DNA23), Austin, TX, USA, Sept. 24–28, 2017.
“Constructing Mathematical Models of RNA based Biomolecular Controllers,” EBRC Fall 2017 Retreat, Atlanta, GA, USA, Sep. 22–23, 2017.
“Designing Biomolecular PID Control,” 11th Annual q-bio Conference, New Brunswick, NJ, USA, Jul. 25–28, 2017.
“Designing RNA based PI Control,” EBRC Spring 2017 Retreat, Evanston, IL, USA, Mar. 24–25, 2017.
2015
“Dynamic Control of DNA Tile Nanotube Nucleation and Elongation,” 21st International Conference on DNA Computing and Molecular Programming (DNA21), Boston, MA, USA, Aug. 17–21, 2015.
“Designing a Self-regulating Biomolecular Comparator,” American Control Conference (ACC), IEEE 2015, Chicago, IL, USA, Jul. 1–3, 2015 (oral presentation).
2012
“Modelling Nonlinearities in a MEMS Square Wave Oscillator,” 2012 IEEE Frequency Control Symposium, Baltimore, MD, USA, May 21–24, 2012 (oral presentation).
2011
“Designing MEMS Resonator-based Oscillators,” 2011 UK-India Education and Research Initiative workshop, IISc Bangalore, India, (Invited talk).
“Electrically Coupled MEMS Oscillators,” 2011 Joint conference of the IEEE Frequency Control Symposium and the European Frequency and Time Forum, San Francisco, CA, USA, May 1–5, 2011.
2007
“Design and Realization of a MEMS Based Variable Optical Attenuator,” International Workshop on Physics of Semiconductor Devices, Mumbai, India, 695–698, 2007 (oral presentation).