Publications

Whole genome sequences of new viral isolates from India.

  1. Chatterjee A, Kondabagil K. Kurla Virus. NCBI Accession Number-KY073338, https://www.ncbi.nlm.nih.gov/nuccore/KY073338, 2017
  2. Chatterjee A, Kondabagil K. Mimivirus bombay. NCBI accession Number-KU761889, http://www.ncbi.nlm.nih.gov/nuccore/KU761889.  2016
  3. Chatterjee A, Kondabagil K. Powai Lake Megavirus.  NCBI accession Number-KU877344, http://www.ncbi.nlm.nih.gov/nuccore/KU877344.12016 

Publications

  1. Wangchuk J, Prakash P, Bhaumik P, Kondabagil K. Bacteriophage N4 large terminase: expression, purification and X-ray crystallographic analysis. Acta Cryst. F74: 198–204, 2018.
  2. Shukla A, Chatterjee A, Kondabagil K. The number of genes encoding repeat domain-containing proteins positively correlates with genome size in amoebal giant viruses. Virus Evolution, 4(1): vex039, 2018.
  3. Gupta A*, Patil S*, Vijaykumar R*, Kondabagil K. The Polyphyletic Origins of Primase-Helicase Bifunctional Proteins. J. Mol. Evol. 85(5-6):188-204, 2017.
  4. Chatterjee A, Kondabagil K. Complete genome sequence of Kurlavirus, a novel member of the family Marseillviridae isolated from Mumbai India, Arch Virol. 162:3243-3245, 2017.
  5. Poonia VS, Kondabagil K, Saha D, Ganguly S. On the functional window of avian campass. Phys Rev E, 95:052417, 2017.
  6. Chatterjee A, Ali F, Bhange D, Kondabagil K. Complete genome sequence of a new Megavirus family member isolated from an inland water lake for the first time in India. Genome Announcements. 4(3). pii: e00402-16. doi: 10.1128/genomeA.00402-16, 2016.
  7. P Halkare, N Punjabi, J Wangchuk, K Kondabagil, S Mukherji. Detection of bacteria using bacteriophage with hollow gold nanostructures immobilized fiber optic sensor. Proc. SPIE 9899, Optical Sensing and Detection IV, 98992Z, doi: 10.1117/12.2230639. 2016.
  8. Chatterjee A, Ali F, Bange D, Kondabagil K. Isolation and complete genome sequencing of Mimivirus bombay, a Giant Virus in sewage of Mumbai, India. Genomics Data. 9:1-3, 2016.
  9. Zade A, Sengupta M, Kondabagil K. Extensive in silico analysis of Mimivirus coded Rab GTPase homolog suggests a possible role in virion membrane biogenesis. Front. Microbiol. Volume 6 | Article 929| September 2015.
  10. Vafabakhsh R, Kondabagil K, Earnest T, Lee KS, Zhang S, Dai L, Dahmen KA, Rao VB, Ha T. Single Molecule Packaging Initiation in Real-time by a Viral DNA Packaging Machine from Bacteriophage T4. Proc Natl Acad Sci U S A. 111:15096-101, 2014.
  11. Kondabagil K, Vafabakhsh R, Ha T, Draper B, Rao VB. Designing a nine cysteine-less DNA packaging motor from bacteriophage T4 reveals new insights into ATPase structure and function. Virology, 468-470:660-668, 2014.. Cover page article.                Cover image Virology                                                                                                    
  12. Chelikani V, Ranjan T, Kondabagil K. Revisiting the genome packaging in viruses with lessons from the “Giants”. Virology, 466-467:15-26, 2014..
  13. Chelikani V*, Ranjan T*, Zade A*, Shukla A, Kondabagil K. Genome segregation and packaging machinery in Acanthamoeba polyphaga mimivirus is reminiscent of bacterial apparatus J Virol. 88:6069-75. 2014..                                      
  14. Kondabagil K. Bacteriophage mediated Bio-control in waste water management. In Industrial and Environmental Microbiology, Studium Press, Chapter 30: 473-495. 2014.. ISBN: 9789380012674
  15. Sun S*, Gao S*, Kondabagil K*, Xiang Y, Rossmann MG, Rao VB. Structure and function of the small terminase component of the DNA packaging machine in T4-like bacteriophages. Proc Natl Acad Sci U S A. 109:817-22, 2012..
  16. Kondabagil K, Draper B, Rao VB. Adenine recognition is a key checkpoint in the energy release mechanism of phage T4 DNA packaging motor.J Mol Biol. 415:329-42. 2012. Cover page article.                                                                       Cover image
  17. Al-Zahrani A*, Kondabagil K*, Gao S, Kelly N, Ghosh-Kumar M, and Rao VB. The Small Terminase, gp16, of Bacteriophage T4 is a Global Regulator of the DNA Packaging Motor. J. Biol. Chem. 284:24490-500, 2009.
  18. Sun S*, Kondabagil K*, Draper B, Alam TI, Bowman VD, Zhang Z, Hegde S, Fokine A, Rossmann MG and Rao VB. The structure of the phage T4 DNA packaging motor suggests a mechanism dependent on electrostatic forces. Cell 135:1251-1262, 2008. Leading Edge Article; previewed, Williams RS, Williams GJ, Tainer JA. A charged performance by gp17 in viral packaging. Cell 135:1169-1171, 2008.
  19. Alam TI, Draper B, Kondabagil K, Rentas FJ, Ghosh-Kumar M, Sun S, Rossmann MG and Rao VB. The headful packaging nuclease of bacteriophage T4. Mol. Microbiol. 69:1180-1190, 2008.
  20. Sun S, Kondabagil K, Gentz P, Rossmann MG and Rao VB. The structure of the ATPase that powers DNA packaging into bacteriophage T4 procapsids. Mol Cell. 25:943-949, 2007.
  21. Kondabagil K, Zhihong Z and Rao VB. The DNA Translocating ATPase of Bacteriophage T4 Packaging Motor. J.Mol.Biol. 363: 786-799, 2006.
  22. Kondabagil K and Rao VB. A Critical Coiled Coil Motif in the Small Terminase, gp16, from Bacteriophage T4: Insights into DNA Packaging Initiation and Assembly of Packaging Motor. J.Mol.Biol. 358:67-82, 2006.
  23. Kanamaru S*, Kondabagil K*, Rossmann MG and Rao MG. The functional domains of bacteriophage T4 terminase. J. Biol. Chem. 279:40795-40801, 2004.

*-Contributed equally and share first authorship.