Publications

2019

• Phale PS, Shah BA & Malhotra H (2019) Variability in assembly of degradation operons for naphthalene and its derivative, Carbaryl suggests mobilization through horizontal gene transfer. Genes 10, 569; doi:10.3390/genes10080569
• Phale PS, Sharma R & Kamini G (2019) Microbial degradation of xenobiotics like aromatic pollutants from the terrestrial environments. Pharmaceuticals and Personal Care Products: Waste Management and Treatment Technology Emerging contaminants and Micro pollutants. Eds. Prasad MNV, Vithanage M and Kapley A p no. 259-278. DOI: https://doi.org/10.1016/B978-0-12-816189-0.00011-1 © 2019 Elsevier Inc.
• Sharma A, Kalyani P, Kapley A & Phale PS (2019) Nitrogen-dependent induction of atrazine degradation pathway in Pseudomonas sp. strain AKN5. FEMS Microbiol Lett 2019, 366(1). doi: 10.1093/femsle/fny277
• Vishwambhar Bhandare, Bajarang Vasant Kumbhar and Ambarish Kunwar, Differential binding affinity of tau repeat region R2 with neuronal specific β-tubulin isotypes, Scientific Reports 9, 10795 (2019)
• Carlos M. Guardia, Raffaella De Pace, Aritra Sen, Amra Saric, Michal Jarnik, David A. Kolin, Ambarish Kunwar, Juan S. Bonifacino, Reversible association with motor proteins (RAMP): A streptavidin-based method to manipulate organelle positioning, PLoS Biology 17(5): e3000279 (2019)
• Bajarang Vasant Kumbhar, Vishwambhar Bhandare, Dulal Panda and Ambarish Kunwar, Delineating the Interaction of Combretastatin A-4 with αβ tubulin Isotypes present in Drug Resistant Human Lung Carcinoma using a Molecular Modeling Approach, Journal of Biomolecular Structure and Dynamics.DOI: 10.1080/07391102.2019.1577174 (2019)
• Anjali Khatri, Arvind Dhawangale, Soumyo Mukherji*, “Single step, mould-free fabrication of polymer optical waveguides for localized surface plasmon resonance based sensing platform”, Sensors and Actuators B (Chemical) 280, 243-255, 2019.
• P Halkare, N Punjabi, J Wangchuk, A Nair, K Kondabagil, S Mukherji* , “Bacteria functionalized gold nanoparticle matrix based fiber-optic sensor for monitoring heavy metal pollution in water”, Sensors and Actuators B: Chemical, 281, 643-651, 2019.
• Barnali Ghatak, SK Babar Ali, Bipan Tudu, Panchanan Pramanik, Soumyo Mukherji, Rajib Bandyopadhyay, “Detecting Ocimene in Mango using Mustard Oil Based Quartz Crystal Microbalance Sensor”, Sensors and Actuators B: Chemical, Sensors and Actuators B: Chemical 284, 514-524, 2019.
• Gauri Shukla, Nirmal Punjabi, Tapanendu Kundu, Soumyo Mukherji*, “Optimization of Plasmonic U-shaped Optical Fiber Sensor for Mercury Ions Detection using Glucose Capped Silver Nanoparticles”, IEEE Sensors Journal 19 (9), 3224-3231, 2019
• Kapil Sadani, Pooja Nag, Soumyo Mukherji*, “LSPR based optical fiber sensor with chitosan capped gold nanoparticles on BSA for trace detection of Hg (II) in water, soil and food samples.”, Biosensors and Bioelectronics, 134, 90-96
• Shekhar Agnihotri, Soumyo Mukherji, Suparna Mukherji, “Impact of Background Water Quality on Disinfection Performance and Silver Release of Immobilized Silver Nanoparticles: Modeling Disinfection Kinetics, Bactericidal Mechanism and Aggregation Behavior.” Chemical Engineering Journal. 372, 684-696.
• Sharda Bharti, Soumyo Mukherji, Suparna Mukherji, “Water Disinfection Using Fixed Bed Reactors Packed with Silver Nanoparticle Immobilized Glass Capillary Tubes”, Science of the Total Environment, Volume 689, 2019, Pages 991-1000
• Vijay S Palaparthy, Shambhulingayya.N.D, Gaurav Gupta, Pallabi Das, Saurabh Chandorkar, Soumyo Mukherji, Maryam Shojaei Baghini, V. Ramgopal Rao, “E-Nose: Multichannel Analog Signal Conditioning Circuit with Pattern Recognition for Explosive Sensing” Accepted for publication in IEEE Sensors.
• Pathak, Mili; Lintern, Katherine; Johnson, Thomas; Nair, Aswathy; Mukherji, Soumyo; Bracewell, Daniel ; Rathore, Anurag “Analytical tools for monitoring changes in physical and chemical properties of chromatography resin upon reuse”, Accepted for publication in Electrophoresis.
• Debasmita Mondal, Rosna Binish, Sonali Samanta, Debjani Paul, and Soumyo Mukherji*, “Detection of total bacterial load in water samples using a disposable impedimetric sensor”. Accepted for publication in IEEE Sensors.
• Agarwal, Dilip; Kushagra, Arindam; Mukherji, Soumyo; Ramgopal Rao, V. “ A study of surface stress and flexural rigidity of symmetrically and asymmetrically biofunctionalized microcantilevers” Accepted for publication in Journal of Micromechanics and Microengineering.
• G Bajpai, R Padinhateeri. “Irregular chromatin: packing density, fiber width, and occurrence of heterogeneous clusters” Biophysical Journal (2019) E-published ahead of print https://doi.org/10.1016/j.bpj.2019.11.004
• Santra A, Kumari K, Padinhateeri R, Dünweg B, Prakash JR. “Universality of the collapse transition of sticky polymers.” Soft Matter. 2019 Oct 9;15(39):7876-7887. doi: 10.1039/c9sm01361j. PMID: 31531489
• Singh A, Tayalia P*. Three-dimensional cryogel matrix for spheroid formation and anti-cancer drug screening. J Biomed Mater Res. 2019, 1-12. DOI: 10.1002/jbm.a.36822.
• Dandia H, Makkad K, Tayalia P*. Glycated collagen – a 3D matrix system to study pathological cell behavior. Biomater. Sci. 2019, DOI: 10.1039/C9BM00184K.
• Peter M, Singh A, Mohankumar K, Jeenger R, Joge P, Gatne M, Tayalia P*. Gelatin based matrices as tunable platform to study in vitro and in vivo 3D cell invasion. ACS Appl. Bio Mater. 2019, 2(2), 916–929.
• Das S, Srinivasan S, Srivastava A, Kumar S, Das G, Das S, Dwivedi A, Karulkar A, Makkad K, Bilala R, Gupta A, Sawant A, Nayak C, Tayalia P, Purwar R. Differential Influence of IL-9 and IL-17 on Actin Cytoskeleton Regulates the Migration Potential of Human Keratinocytes. J. Immunol. 2019, 202(7), 1949-1961.
• Kirti S, Patel K, Das S, Shrimali P, Samanta S, Kumar R, Chatterjee D, Ghosh D, Kumar A, Tayalia P, Maji SK. Amyloid Fibrils with Positive Charge Enhance Retroviral Transduction in Mammalian Cells. ACS Biomater. Sci. Eng. 2019, 5(1), 126–138.
• Dubey R, Patil K, Dantu SC, Sardesai DM, Bhatia P, Malik N, Acharya JD, Sarkar S, Ghosh S, Chakrabarti R, Sharma S, Kumar A. (2019) Azadirachtin inhibits amyloid formation, disaggregates pre-formed fibrils and protects pancreatic β-cells from human islet amyloid polypeptide/amylin-induced cytotoxicity. Biochem J. 476(5):889-907. doi: 10.1042/BCJ20180820.
• Bhattacharya A, Shukla VK, Hosur RV, Kumar A. Backbone and side-chain resonance assignments of centromeric protein Scm3 from Saccharomyces cerevisiae. Biomol NMR Assign. . doi: 10.1007/s12104-019-09889-8
• Jahan A., George E., Saxena N., Sen S., Silver nanoparticle entrapped soft GelMA gels as prospective scaffolds for wound healing, ACS Applied Bio Materials, 2019.
• Das, A., Barai, A., Monteiro, M., Kumar, S., Sen, S., Nuclear softening is essential for protease-independent migration, Matrix Biol., 2019.
• hailesh Appukuttan, Mithun Padmakumar, Rohit Manchanda [2018] Electrophysiology of Syncytial Smooth Muscle. Journal of Experimental Neuroscience Vol 13: 1–16
• Gupta S, & Manchanda, R. [2019]. A computational model of large conductance voltage and calcium activated potassium channels: implications for calcium dynamics and electrophysiology in detrusor smooth muscle cells. Journal of Computational Neuroscience 2019 DOI:10.1007/s10827-019-00713-9
• Sengupta, N., & Manchanda, R. [2019] “Spontaneous Synaptic Drive in Detrusor Smooth Muscle: Computational Investigation and Implications for Urinary Bladder Function” . Journal of Computational Neuroscience 2019 (DOI: 10.1007/s10827-019-00731-7)
• Mandge, D., Shukla, P.R., Bhatnagar, A., & Manchanda, R.[2019]. “Computational Model for Cross-Depolarization in DRG Neurons via Satellite Glial Cells using [K]o: Role of Kir4.1 Channels and Extracellular Leakage”. In Engineering in Medicine and Biology Society (EMBC), 2019 41st Annual International Conference of the IEEE.
• Detection of total bacterial load in water samples using a disposable impedimetric sensor, D. Mondal, R. Binish, S. Samanta, D. Paul and S. Mukherji, to appear in IEEE Sensors (2019).
• An integrated one-step assay combining thermal lysis and loop-mediated isothermal DNA amplification (LAMP) in 30 min from E. coli and M. smegmatis cells on a paper substrate, P. Naik, S. Jaitpal, P. Shetty and D. Paul, Sensors and Actuators B (2019), Vol. 291, p. 74.
• Label-free electrochemical detection of S. mutans exploiting commercially fabricated printed circuit board sensing electrodes, G. Dutta, A. A. Jallow, D. Paul and D. Moschou, Micromachines (2019), Vol 10, p. 575.
• Prasad P, Sanyal K and Ghosh SK. Sth1, the key subunit of the RSC chromatin remodeling complex, is essential in maintaining chromosomal integrity and mediating high fidelity chromosome segregation in the human fungal pathogen Candida albicans. Frontiers in Microbiology 2019
• Mittal P, Trakroo D, Chauhan A, Shah S and Ghosh SK. Outer kinetochore protein Dam1 promotes centromere clustering in parallel with Slk19 in budding yeast. Chromosoma 2019 Feb.
• Sau S, Ghosh SK, Liu YT, Ma CH, Jayaram M. Hitchhiking on chromosomes: A persistence strategy shared by diverse selfish DNA elements. Plasmid. 2019 Feb 3. doi: 10.1016/j.plasmid.2019.01.004
• Jacob R.S., Anoop A., and Maji S.K. (2019) Protein Nanofibrils as Storage Forms of Peptide Drugs and Hormones. Perrett S., Buell A., Knowles T. (eds) Biological and Bio-inspired Nanomaterials. Advances in Experimental Medicine and Biology, 1174. Springer, Singapore
• Navalkar A, Ghosh S, Pandey S, Paul A, Datta D and Maji, S. K. (2019), Prion-like p53 amyloids in cancer. Biochemistry. DOI:10.1021/acs.biochem.9b00796 (in press)
• Mukhopadhyay A, Mehra, S., Kumar, R., Maji, S.K., Krishnamoorthy, G. and Sharma, K.P. (2019), α‐Synuclein Spontaneously Adopts Stable and Reversible α‐Helical Structure in Water‐Less Environment. ChemPhysChem, 20(21):2783-2790
• Sharma, H., Navalkar, A., Maji, S. K., and Agrawal, A. (2019) Analysis of drug-protein interaction in bio-inspired microwells. SN Applied Sciences, 1: 819. DOI: doi.org/10.1007/s42452-019-0778-8.
• Ray, S., Singh, N., Pandey, S., Kumar, R., Gadhe, L., Datta, D., Patel, K., Mahato, J., Navalkar, A., Panigrahi, R., Chatterjee, D., Maiti, S., Bhatia, S., Mehra, S., Singh, A., Gerez, J., Chowdhury, A., Kumar, A., Padinhateeri, R., Riek, R., Krishnamoorthy, G., and Maji, S.K. (2019) Liquid-liquid phase separation and liquid-to-solid transition mediate α-synuclein amyloid fibril containing hydrogel formation. bioRxiv, DOI:10.1101/619858.
• Mehra, S., Sahay, S., and Maji, S. K. (2019) α-Synuclein misfolding and aggregation: Implications in Parkinson’s disease pathogenesis. Biochimica et Biophysica Acta (BBA) – Proteins and Proteomics, pii: S1570-9639(19)30045-7.
• Bhattacharyya, D., Mohite, G. M., Krishnamoorthy, J., Gayen N, Mehra, S., Navalkar, A., Kotler, S. A., Ratha, B. N., Ghosh, A., Kumar, R., Garai, K., Mandal, A., Maji, S. K. and Bhunia, A. (2019) Lipopolysaccharide from gut microbiota modulates k α-synuclein aggregation and alters its biological function. ACS Chemical Neuroscience, 10(5): 2229-2236
• Jayarajan, R., Kumar, R., Gupta,J., Dev,G., Kadu,P., Chatterjee,D., Bahadur,D., Maiti,D. and Maji, S. K.(2019) Fabrication of amyloid fibril-palladium nanocomposite: A sustainable catalyst for C–H activation and electrooxidation of ethanol, J. Mater. Chem. A,7,4486.

2018

• Kamini, Sharma R, Punekar NS & PhalePS. (2018) Carbaryl as carbon and nitrogen source: characterization of inducible methylamine metabolic pathway at the biochemical and molecular level in Pseudomonas C5pp. Appl Environ Microbiol 84(24). DOI: 10.1128/AEM.01866-18.
• Pandey S, Phale PS & Bhaumik P (2018) Structural modulation of a periplasmic sugar-binding protein probes into its evolutionary ancestry. J Struct Biol DOI:10.1016/j.jsb.2018.09.006
• Kamini G*, Dasvit S*, Trivedi VD, Varunjikar M & Phale PS (2018) Compartmentalization of carbaryl degradation pathway: Molecular characterization of inducible periplasmic carbaryl hydrolase from Pseudomonas spp. Appl Environ Microbiol, 84:e02115-17, https://doi.org/10.1128/AEM.02115-17. (*Equal author contribution)
• Bajarang Vasant Kumbhar, Dulal Panda and Ambarish Kunwar, Interaction of microtubule depolymerizing agent indanocine with different human αβ tubulin isotypes, PLoS ONE 13(3): e0194934 (2018)
• Khatri, Anjali; Punjabi, Nirmal; Ghosh, Dhiman; Maji, Samir K; Mukherji, Soumyo*, “Detection and differentiation of α-Synuclein monomer and fibril by chitosan film coated nanogold array on optical sensor platform” Sensors and Actuators B: Chemical Vol 255, 2018, pp 692-700
• B Karunakaran, J Tharion, AR Dhawangale, D Paul, S. Mukherji*, “Fabrication of miniature elastomer lenses with programmable liquid mold for smartphone microscopy: curing polydimethylsiloxane with in situ curvature control,” Journal of biomedical optics, 2018
• Dilip Kumar Agarwal, Abhinav Prasad, Madhuri Vinchurkar, Sahir Gandhi, Deepika Prabhakar, Soumyo Mukherji, V. Ramgopal Rao, “Detection of heart type fatty acid binding protein (h FABP) using piezoresistive polymer microcantilevers functionalized by a dry method”, Applied Nanoscience, 2018.
• SR Barman, A Nain, S Jain, N Punjabi, S Mukherji, J Satija, “Dendrimer as Multifunctional Capping Agent for Metal Nanoparticles in Bioimaging, Drug Delivery and Sensor Applications”, Journal of Materials Chemistry B, 2018.
• A Prabhakar, N Mishra, D Verma, S Mukherji, “Investigation of dual-bend serpentine/spiral waveguides coupled to a microchannel system for competent, evanescent-wave-absorption-based, on-chip, biological-/chemical-sensing applications”. RSC Advances 8 (62), 35539-35550, 2018.
• S Chandra, A Dhawangale, S Mukherji*, “Hand-held optical sensor using denatured antibody coated electro-active polymer for ultra-trace detection of copper in blood serum and environmental samples”. Biosensors and Bioelectronics 110, 38-43, 2018.
• S Bharti, S Mukherji, S Mukherji, “Photocatalytic action of silver-titanium dioxide nanocomposite against pathogenic bacteria”, Journal of the Indian Chemical Society 95 (3), 261-268, 2018
• Bameta T, Das D, Padinhateeri R. “Coupling of replisome movement with nucleosome dynamics can contribute to the parent-daughter information transfer.” Nucleic Acids Res. 2018 Jun 1;46(10):4991-5000. doi: 10.1093/nar/gky207. PMID: 29850895
• Jha NN, Ranganathan S, Kumar R, Mehra S, Panigrahi R, Navalkar A, Ghosh D, Kumar A, Padinhateeri R, Maji SK. “Complexation of NAC-Derived Peptide Ligands with the C-Terminus of α-Synuclein Accelerates Its Aggregation.” Biochemistry. 2018 Feb 6;57(5):791-804. doi: 10.1021/acs.biochem.7b01090. Epub 2018 Jan 22. PMID: 29286644
• Shrimali P, Peter M, Singh A, Dalal N, Dakave S, Chiplunkar SV, Tayalia P*. Efficient in situ gene delivery via PEG diacrylate matrices. Biomater. Sci. 2018, 6, 3241-3250.
• Rajpurohit J, Upadhyay A, Das C, Dubey R, Vaidya S, Krishnan V, Kumar A, Shanmugam M. (2018). Unusual Methylenediolate Bridged Hexanuclear Ruthenium (III) Complexes: Syntheses and Their Application. Inorganic chemistry, 57(23), 14967-14982.
• Malik, N., Dantu, S. C., Shukla, S., Kombrabail, M., Ghosh, S. K., Krishnamoorthy, G., & Kumar, A. (2018). Conformational flexibility of histone variant CENP-ACse4 is regulated by histone H4: A mechanism to stabilize soluble Cse4. Journal of Biological Chemistry, 293(52), 20273-20284.
• Agadi, N., Vasudevan, S., & Kumar, A. (2018). Structural insight into the mechanism of action of antimicrobial peptide BMAP-28 (1–18) and its analogue mutBMAP18. Journal of structural biology, 204(3), 435-448.
• Kirti S, Patel K,Das S, Shrimali S, Samanta S, Kumar R,Chatterjee D, Ghosh D, Kumar A, Tayalia P and Maji SK (2018), Amyloid Fibrils with Positive Charge Enhance Retroviral Transduction in Mammalian Cells. ACS Biomaterials Science and Engineering, DOI:10.1021/acsbiomaterials.8b00248
• Mehra S, Ghosh D, Kumar R, Mondal M, Gadhe LG, Das S, Anoop A, Jha NN, Jacob RS, Chatterjee D, Ray S, Singh N, Kumar A, and Maji SK (2018), Glycosaminoglycans have variable effects on α-synuclein aggregation and differentially affect the activities of the resulting amyloid fibrils. Journal of Biological Chemistry, DOI:10.1074/jbc.RA118.004267
• Mohite GM, Kumar R, Panigrahi P, Navalkar A, Singh N, Datta D, Mehra S, Ray S, Gadhe LG, Das S, Singh N, Chatterjee D, Kumar A and Maji SK(2018), Comparison of kinetics, toxicity, oligomers formation and membrane binding capacity of α-synuclein familial mutations at A53 site including newly discovered A53V mutation. Biochemistry ,DOI:10.1021/acs.biochem.8b00314.
• Lv G, Kumar A, Huang Y and Eliezer D (2018), A Protofilament-Protofilament Interface in the Structure of Mouse α-Synuclein Fibrils Biophysical Journal J. doi: 10.1016/j.bpj.2018.05.011.
• NN Jha, S Ranganathan, R Kumar, S Mehra, R Panigrahi, A Navalkar, D Ghosh, Kumar A, R Padinhateeri and SK Maji (2018), Complexation of NAC derived peptide ligands with C-terminus of α-synuclein accelerates its aggregation. Biochemistry, 57(5):791-804; DOI:10.1021/acs.biochem.7b01090
• Jacob, R. S., Das, S., Singh, N., Patel, K., Datta, D., Sen, S., Maji, S. K., Amyloids Are Novel Cell-Adhesive Matrices, Adv Exp Med Biol. 2018;1112:79-97.
• Sthanam L.K., Saxena N., Mistari V., Roy T., Jadhav S., Sen S., Initial priming on soft substrates enhances subsequent topography-induced neuronal differentiation in ESCs but not in MSCs, ACS Biomaterials Science & Engineering, 2018.
• Mishra V., Rathore I., Arekar A., Sthanam L.K., Xiao H., Kiso Y., Sen S., Patankar S., Gustchina A., Hidaka K., Wlodawer A., Yada R.Y., Bhaumik P., “Deciphering the mechanism of potent peptidomimetic inhibitors targeting plasmepsins – biochemical and structural insights”, FEBS J., 2018.
• Kumar, S., Das, A., Sen, S., Multi-compartment cell-based modeling of confined migration: regulation by cell intrinsic and extrinsic factors, Mol. Biol. Cell 2018.
• George E., Barai A., Shirke P., Majumder A., Sen S., “Engineering Interfacial Migration by Collective Tuning of Adhesion Anisotropy and Stiffness”, Acta Biomaterialia, 2018.
• Saxena N., Mogha P., Dash S., Majumder A., Jadhav S.*, Sen S*., “Matrix elasticity regulates mesenchymal stem cell chemotaxis”, J. Cell Sci. 2018. (*: co-corresponding authors).
• Kumar S*., Das A.*, Barai A., Sen S., “MMP secretion rate and inter-invadopodia spacing collectively govern cancer invasiveness”, Biophysical Journal, 2018. (*: Contributed equally).
• Kapoor A.*, Barai A.*, Thakur B., Das A., Patwardhan S. R., Monteiro M., Gaikwad S., Bukhari A., Mogha P., Majumder A., De A., Ray P.#, Sen S.#, “Soft drug-resistant ovarian cancer cells migrate via two distinct mechanisms utilizing myosin II-based contractility”, BBA Molecular Cell Research, February 2018. (*: contributed equally. #: co-corresponding authors).
• Desai S.*, Barai A.*, Bukhari A., De A.#, Sen S.#, “α-Actinin-4 confers radioresistance coupled invasiveness in breast cancer cells through AKT pathway”, BBA Molecular Cell Research, January 2018 (*: contributed equally. #: co-corresponding authors).
• Mahapatra, C., Brain, K. L., & Manchanda, R. (2018). A biophysically constrained computational model of the action potential of mouse urinary bladder smooth muscle. PloS one, 13(7), e0200712.
• Padmakumar, M., Brain, K. L., Young, J. S., & Manchanda, R. (2018). A four-component model of the action potential in mouse detrusor smooth muscle cell. PloS one, 13(1), e0190016.
• Mandge, D., & Manchanda, R. (2018). A biophysically detailed computational model of bladder small DRG neuron soma. PLoS computational biology, 14(7), e1006293.
• Rane M, Manchanda R. (2018) “Effects of location and extent of spine clustering on synaptic integration in striatal medium spiny neurons-a computational study.,”Medical & Biological Engineering & Computing, Vol. 56(7):1173-1187 : doi: 10.1007/s11517, 2018.
• Mahapatra, C., Brain, K. L., & Manchanda, R. (2018, October). Computational Study of Hodgkin-Huxley Type Calcium-Dependent Potassium Current in Urinary Bladder Over Activity. In 2018 IEEE 8th International Conference on Computational Advances in Bio and Medical Sciences (ICCABS) (pp. 1-4).
• Gupta, S., & Manchanda, R. (2018, July). Effect of Gating Charges on Mediating the Dual Activation of BK Channels in Smooth Muscle Cells: A Computational Study. In 2018 40th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC) (pp. 5838-5841).
• Sengupta, N., Brain, L. K., & Manchanda, R. (2018, July). Cellular Environment in a Bundle Modulates SEJP Characteristics in Detrusor Smooth Muscle. In 2018 40th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC) (pp. 5842-5845).
• Mandge, D., Manchanda R. (2018). Role of inward rectification of SKCa current on frequency modulation of small- diameter dorsal root ganglion neuron soma firing: a computational study. Bernstein Conference 2018. DOI: 10.12751/nncn.bc2018.0070.
• Clogging-free continuous operation with whole blood in a radial pillar device (RAPID), N. Mehendale, O. Sharma, S. Pandey and D. Paul, Biomedical Microdevices (2018), Vol. 20, p. 75.
• Fabrication of miniature elastomer lenses with programmable liquid mold for smartphone microscopy: curing polydimethylsiloxane with in situ curvature control, B. Karunakaran, J. Tharion, A. Dhawangale, D. Paul and S. Mukherji, Journal of Biomedical Optics (2018), Vol. 23, p. 025002.
• A RAdial PIllar Device (RAPID) for continuous
and high-throughput separation of multi-sized particles, N. Mehendale, O. Sharma, C. D’Costa and D. Paul, Biomedical Microdevices (2018), Vol. 20, p. 6.
• Malik, N., Dantu, S. C., Shukla, S., Kombrabail, M., Ghosh, S. K., Krishnamoorthy, G., & Kumar, A. Conformational flexibility of histone variant CENP-ACse4 is regulated by histone H4: A mechanism to stabilize soluble Cse4. Journal of Biological Chemistry, 2018 ; 293(52), 20273-20284
• Prajapati, H.K., Agarwal, M., Mittal, P., and Ghosh, S.K. (2018). Evidence of Zip1 Promoting Sister Kinetochore Mono-orientation During Meiosis in Budding Yeast. G3 (Bethesda) 8, 3691-3701
• Mehta, G., Anbalagan, G.K., Bharati, A.P., Gadre, P., and Ghosh, S.K. (2018). An interplay between Shugoshin and Spo13 for centromeric cohesin protection and sister kinetochore mono-orientation during meiosis I in Saccharomyces cerevisiae. Current Genetics 64, 1141-1152
• Rizvi, S.M., Prajapati H.K., &. Ghosh S.K. The 2 micron plasmid: A selfish genetic element with an optimized survival strategy within Saccharomyces cerevisiae. Current Genetics, (2018) 64: 25.
• Deshmukh, P.P., Navalkar, A., Maji, S.K., and Manjare, S.T., (2018) Phenylselenyl containing turn-on dibodipy probe for selective detection of superoxide in mammalian breast cancer cell line, Sensors and Actuators B: Chemical, 281(2019):8-13.
• Sharma, H., John, K., Gaddam, A., Navalkar, A., Maji, S.K., and Agrawal, A., (2018) A magnet-actuated biomimetic device for isolating biological entities in microwells, Scientific Reports, 8:12717.
• Mohite, G. M., Navalkar, A., Kumar, A., Mehra, S., Das, S., Gadhe, L. G., Ghosh, D., Alias, B., Chandrawanshi, V., Ramakrishnan, A., Mehra, S., Maji, S. K. (2018) Familial α-synuclein A53E mutation enhances cell death in response to environmental toxins due to more population of oligomers, Biochemistry, 57(33):5014-5028.
• Kirti, S., Patel, K., Das, S., Shrimali, P., Samanta, S., Kumar, R., Chatterjee, D., Ghosh, D., Kumar, A., Tayalia, P. and Maji, S.K. (2018), Amyloid fibrils with positive charge enhance retroviral transduction in mammalian cells. ACS Biomaterials Science and Engineering, 5,1, 126-138.
• Mehra, S., Ghosh, D., Kumar, R., Mondal, M., Gadhe, L.G., Das, S., Anoop, A., Jha, NN., Jacob, RS., Chatterjee, D., Ray, S., Singh, N., Kumar, A., and Maji S.K. (2018), Glycosaminoglycans have variable effects on α-synuclein aggregation and differentially affect the activities of the resulting amyloid fibrils. Journal of Biological Chemistry, 293(34): 12975-12991.
• Mohite G.M., Dwivedi, S., Das, S., Kumar, R., Paluri, S., Mehra, S., Ruhela, N., Arunima, S., Jha, N.N. and Maji S.K. (2018), Parkinson’s disease associated α-synuclein familial mutants promote dopaminergic neuronal death in Drosophila melanogaster. ACS Chemical Neuroscience, 9(11):2628-2638.
• Das, S., Kumawat, M.K., Ranganathan, S., Kumar, R., Adamcik, J., Kadu, P., Paadinhaateri, R., Srivastava, R., Mezzenga, R., and Maji, S.K. (2018), Cell alignment on graphene-amyloid composites. Advanced Materials Interfaces. Article ID: 1800621.
• Jacob, R.S., Das, S., Singh, N., Patel, K., Datta, D., Sen, S., and Maji S.K., (2018), Amyloids are novel cell adhesive matrices. Biochemical and Biophysical Roles of Cell Surface Molecules.; 1112:79-97; Springer Nature.
• Mohite, G.M., Kumar, R., Panigrahi, R., Navalkar, A., Singh, N., Datta, D., Mehra, S., Ray, S., Gadhe, L.G., Das, S., Singh, N., Chatterjee, D., Kumar, A and Maji, S.K. (2018) Comparison of kinetics, toxicity, oligomers formation and membrane binding capacity of α-synuclein familial mutations at A53 site including newly discovered A53V mutation, Biochemistry, 57(35):5183-5187.
• Das S., Jacob R.S., Patel K, Singh, N. and Maji, S.K. (2018), Amyloid fibrils: Versatile biomaterials for cell adhesion and tissue engineering applications. Biomacromolecules, 19(6):1826-1839
• Kumar, R., Das, S., Mohite, G.M., Rout, S.K., Halder, S., Jha, N.N., Ray, S., Mehra, S., Agarwal, V., Maji, S.K. (2018), Cytotoxic oligomers and fibrils trapped in a gel-like state of α-synuclein assemblies. Angewandte Chemie International Edition, 57(19): 5262-5266.
• Bhattacharyya, D., Kumar, R., Mehra, S., Ghosh, A., Maji, S.K., Bhunia, A. (2018), Multitude NMR Studies of α-Synuclein Familial Mutants: Probing Their Differential Aggregation Propensities. Chemical Communications, 54(29): 3605-3608.
• Jha, N.N., Ranganathan, S., Kumar, R., Mehra, S., Panigrahi, R., Navalkar, A., Ghosh, D., Kumar, A., Padinhateeri, R., Maji, S.K. (2018) Complexation of NAC derived peptide ligands with C-terminus of α-synuclein accelerates its aggregation. Biochemistry, 57(5): 791-804.

2017

• Choudhary A, Modak A, Apte SK & Phale PS (2017) Transcriptional modulation of transport and metabolism associated gene clusters leading to utilization of benzoate in preference to glucose in Pseudomonas putida CSV86. Appl Environ Microbiol 83:e01280-17. https://doi.org/10.1128/AEM.01280-17.
• – Choudhary A, Purohit HJ & Phale PS (2017) Benzoate transport in Pseudomonas putida CSV86. FEMS Microbiol Lett 364: fnx118, doi: 10.1093/femsle/fnx118.
• – Trivedi VD, Bharadwaj A, Varunjikar MS, Singha AK, Upadhyay P, Gautam K & Phale PS (2017) Insights into metabolism and sodium chloride adaptability of carbaryl degrading halotolerant Pseudomonas sp. strain C7. Arch Microbiol 199:907-916. DOI 10.1007/s00203-017-1363-4.
• – Mohan K & Phale PS (2017) Insight into the carbon-source dependent inducible veratrylalcohol and ferulic acid metabolism in Pseudomonas putida CSV86. Appl Environ Microbiol 83:e03326-16. https://doi.org/10.1128/AEM.03326-16.
• Anjneya Takshak, Tanushree Roy, Parag Tandaiya and Ambarish Kunwar, Effect of Fuel Concentration and Force on Collective Transport by a Team of Dynein Motors, Protein Science, Vol. 26, 186–197 (2017)
• Anjneya Takshak, Nirvantosh Mishra, Aditi S Kulkarni, Ambarish Kunwar, Effect of Fuel Concentration on Cargo Transport by a Team of Kinesin Motors, Physica A, Vol. 467, 395–406 (2017)
• Rajan Kumar Pandey, Bajrang Vashant Kumbhar, Shyam Sundar, Ambarish Kunwar and Vijay Kumar Prajapati, Structure based virtual screening, molecular docking, ADMET and molecular simulations to develop benzoxaborole analogues as potential inhibitor against Leishmania donovani trypanothione reductase, Journal of Receptors and Signal Transduction, Vol. 37, 60-70 (2017)
• Rajan Kumar Pandey, Bajarang Vasant Kumbhar, Shubham Srivastava, Ruchi Malik, Shyam Sundar, Ambarish Kunwar and Vijay Kumar Prajapati, Febrifugine analogues as Leishmaniadonovani trypanothione reductase inhibitors: binding energy analysis assisted by molecular docking, ADMET and molecular dynamics simulation, Journal of Biomolecular Structure and Dynamics, Vol. 35, 141-158 (2017)
• Dhiman Chakraborty, Vivek Sharma, Shekhar Agnihotri, Soumyo Mukherji, Suparna Mukherji, “Disinfection of water in a batch reactor using chloridized silver surfaces”, Journal of Water Process Engineering, Volume 16, April 2017, Pages 41-49.
• Sutapa Chandra, Reshma Bharadwaj, Soumyo Mukherji*, “Label free ultrasensitive optical sensor decorated with polyaniline nanofibers: characterization and immunosensing application”, Sensors & Actuators: B. Chemical, 240, 443-450, 2017.
• Prabhakar, Amit; Mishra, Neha; Mukherji, Soumyo, “A Comprehensive Investigation of a Microfabricated U-Bend Polymer Waveguide With Analyte Micro-Reservoir for Versatile On-Chip Sensing Applications”, Journal of Microelectromechanical Systems, 2017, Volume: 26, Issue: 4 Pages: 935 – 945
• Patil, Sheetal; Ramgir, Niranjan; Mukherji, Soumyo; Rao, V Ramgopal, “PVA Modified ZnO Nanowire based Microsensors Platform for Relative Humidity and Soil Moisture Measurement”, Sensors and Actuators B: Chemical, 2017
• Mondal, Debasmita; Paul, Debjani; Mukherji, Soumyo* “Impedance Spectroscopy-Based Detection of Cardiac Biomarkers on Polyaniline Coated Filter Paper,” IEEE Sensors Journal, Vol. 17 16:, 2017, pp. 5021-5029
• Aparna JS, Padinhateeri R, Das D. “Signatures of a macroscopic switching transition for a dynamic microtubule.” Sci Rep. 2017 Apr 4;7:45747. doi: 10.1038/srep45747. PMID: 28374844
• Bameta T, Das D, Das D, Padinhateeri R, Inamdar MM. “Sufficient conditions for the additivity of stall forces generated by multiple filaments or motors.” Phys Rev E. 2017 Feb;95(2-1):022406. doi: 10.1103/PhysRevE.95.022406. Epub 2017 Feb 13. PMID: 28297971
• Bajpai G, Jain I, Inamdar MM, Das D, Padinhateeri R. “Binding of DNA-bending non-histone proteins destabilizes regular 30-nm chromatin structure.” PLoS Comput Biol. 2017 Jan 30;13(1):e1005365. doi: 10.1371/journal.pcbi.1005365. eCollection 2017 Jan. PMID: 28135276
• Kar RK, Kharerin H, Padinhateeri R, Bhat PJ. “Multiple Conformations of Gal3 Protein Drive the Galactose-Induced Allosteric Activation of the GAL Genetic Switch of Saccharomyces cerevisiae.” J Mol Biol. 2017 Jan 6;429(1):158-176. doi: 10.1016/j.jmb.2016.11.005. Epub 2016 Nov 29. PMID: 27913116
• Dubey R, Minj P, Malik N, Sardesai DM, Kulkarni SH, Acharya JD, Bhavesh NS, Sharma S, Kumar A (2017) Recombinant human islet amyloid polypeptide forms shorter fibrils and mediates β-cell apoptosis via generation of oxidative stress. Biochem J. 16:3915-3934
• Jha NN, Kumar R, Panigrahi R, Navalkar A, Ghosh D, Sahay S, Mondal M, Kumar A Maji SK (2017) Comparison of α-Synuclein Fibril Inhibition by Four Different Amyloid Inhibitors. ACS Chem Neurosci. [Just Accepted]
• Ranjan P, Kumar A (2017) Perturbation in long-range contacts modulates kinetics of amyloid formation in α-Synuclein familial mutants. ACS Chem. Neurosci. 18: 2235-2246
• Khaneja N, Kumar A (2017) Two pulse recoupling. J Magn Res 281: 162-171.
• Khaneja N, Kumar A (2017) Broadband excitation by method of double sweep. Applied Magn Res 281: 162-171.
• Shukla VK, Singh JS, Vispute N, Ahmad B, Kumar A, Hosur RV (2017) A functionally relevant intermediate in the unfolding pathway of Cyclophilin. Biophysical J 112: 605-619
• Ranjan P, Ghosh D, Yarramala DS, Maji SK, Kumar A (2017) Differential copper binding to alpha-synuclein and its disease-associated mutants affect the aggregation and amyloid formation. Biochim Biophys Acta 1861: 365-374
• Das A., Monteiro M., Barai A., Kumar S., Sen S., “MMP proteolytic activity regulates cancer invasiveness by modulating integrins”, Scientific Reports, 2017 (Selected as one of the top 100 in Cell Biology papers).
• Srinivasan S.*, Ashok V.*, Mohanty S., Das A., Das S., Kumar S., Sen S.#, Purwar R.#, “Blockade of Rho-associated protein kinase (ROCK) inhibits the contractility and invasion potential of cancer stem like cells”, Oncotarget, 2017 (*: contributed equally. #: co-corresponding authors).
• Dey S. K., Singh R. K., Chattoraj S., Saha S., Das A., Bhattacharyya K., Sengupta K., Sen S., Jana S. S., “Differential role of nonmuscle myosin II isoforms during blebbing of MCF-7 cells.”, Mol. Biol. Cell., 2017.
• Sthanam S. L., Barai A., Rastogi A., Mistari V. K., Maria A., Kauthale R., Gatne M. , Sen S., “Biophysical regulation of mouse embryonic stem cell fate and genomic integrity by feeder derived matrices”, Biomaterials, 2017.
• Appukuttan, S., Brain, K. L., & Manchanda, R. [2017] “Modeling extracellular fields for a three-dimensional network of cells using neuron,” Journal Of Neuroscience Methods,Vol.290 :, 2017, pp.27-38.
• Appukuttan, S., Padmakumar, M., Brain, K. L., & Manchanda, R. (2017) “A Method for the Analysis of AP Foot Convexity: Insights into Smooth Muscle Biophysics,” Frontiers In Bioengineering And Biotechnology, Vol.5: doi: 10.3389/fbioe.2017.00064.
• Dave, V., & Manchanda, R. (2017) “A computational model of the Ca2+ transients and influence of buffering in guinea pig urinary bladder smooth muscle cells. ,”Journal of Bioinformatics and Computational Biology, Vol. :10.1142/S0219720017500111, 2017.
• Manchanda R. (2017) The Unquiet Mind Cancer: The Metaethical Quandary of Therapies (Book Review) J Can Res Ther 12:1207-8.
• Mahapatra, C., Dave, V., & Manchanda, R. (2017) “A mathematical modeling of voltage gated calcium ion channel based calcium transient response in urinary bladder smooth muscle cell.,”International Journal of Pure and Applied Mathematics, Vol.117 :, 2017, pp.71-75.
• Mahapatra, C., & Manchanda, R. (2017) “Simulation of In Vitro-Like Electrical Activities in Urinary Bladder Smooth Muscle Cells,” Journal of Biomimetics, Biomaterials and Biomedical Engineering,Vol.33 :, 2017, pp .45-51.
• Mrunal Rane and Rohit Manchanda (2017) “Effect of Spine Density on Excitability in Accumbal Medium Spiny Neurons-A. Computational Approach,” Journal of Addiction Research & Therapy,Vol.8:4 : DOI: doi:10.4172/2155-6105.1000337, 2017.
• Mahapatra, C. (2017, April). Computational study of inward rectifying ion channel in urinary bladder over activity: student research abstract. In Proceedings of the Symposium on Applied Computing (pp. 31-32). ACM.
• Thermal lysis and isothermal amplification of Mycobacterium tuberculosis H37Rv in one tube, P. Shetty, D. Ghosh and D. Paul, Journal of Microbiological Methods (2017), Vol.143, p. 1.
• Impedance spectroscopy-based detection of cardiac biomarkers on polyaniline coated filter paper, D. Mondal, D. Paul and S. Mukherji, IEEE Sensors (2017), Vol. 17, p. 5021.
• Rizvi, S.M., H.K. Prajapati, P. Nag & S.K. Ghosh. The 2 micron plasmid encoded protein Raf1 regulates both stability and copy number of the plasmid by blocking the formation of the Rep1-Rep2 repressor complex. Nucleic Acid Research, 2017; 45, 7167-7179.
• Prajapati, H.K., S.M. Rizvi, I. Rathore & S.K. Ghosh. Microtubule-associated proteins, Bik1 and Bim1, are required for faithful partitioning of the endogenous 2 micron plasmids in budding yeast. Molecular Microbiology, 2017, 103: 1046-1064.
• Jha, N.N., Kumar, R., Panigrahi, R., Navalkar, A., Ghosh, D., Sahay, S., Mondal, M., Kumar, A. and Maji, S.K. (2017) Comparison of α-synuclein fibril inhibition by four different amyloid inhibitors. ACS Chemical Neuroscience, 8(12): 2722-2733.
• Khatri, A., Punjabi, N., Ghosh, D., Maji, S.K. and Mukherji, S (2017) Detection and differentiation of α-Synuclein monomer and fibril by chitosan film coated nanogold array on optical sensor platform. Sensors and Actuators B: Chemical. 255(1): 692-700.
• Das, S., Kumar, R., Jha, N.N. and Maji, S.K. (2017) Controlled Exposure of Bioactive Growth Factor in 3D Amyloid Hydrogel for Stem Cells Differentiation. Advanced Healthcare Materials. 6(18), Article ID: 1700368.
• Ghosh, S., Salot, S., Sengupta, S., Navalkar, A., Ghosh, D., Jacob, R., Das, S., Kumar, R., Jha, N.N., Sahay, S., Mehra, S., Mohite G.M., Ghosh S.K., Kombrabail M., Krishnamoorthy G., Chaudhari P. and Maji S.K. (2017) p53 amyloid formation leading to its loss of function: implications in cancer pathogenesis. Cell death and differentiation, 24(10), 1784-1798.
• Ranjan, P., Ghosh, D., Yarramala, D. S., Das, S., Maji, S. K., and Kumar, A. (2017) Differential copper binding to alpha-synuclein and its disease-associated mutants affect the aggregation and amyloid formation. Biochimica et Biophysica Acta (BBA)-General Subjects, 1861(2), 365-374.
• Ghosh, D., Mehra, S., Sahay, S., Singh, P. K., and Maji, S. K. (2017) α-synuclein aggregation and its modulation. International journal of biological macromolecules, 100, 37-54.